This is a simulation I am currently doing. The model is described here:

Hello friends! I am back with my coarse-grained(CG) molecular dynamics(MD) simulation series. Today we will see how to create a vesicle coordinate file and assign it proper topology and structure information.

In the last article, we saw how to set-up a coarse-grained simulation using LAMMPS software. In today's article, I will discuss how to come up with a model to simulate a coarse-grained lipid system. In

Hi friends... To be honest I am overwhelmed with many things recently. And few days back my tinkering became official work(Well... Kinda). Few of you might have seen my previous post. So I will elaborate

This is a 2-dimensional toy problem I ran today. You can guess here hydrophobic(water-hating) green(the cyan particles are the solvent particles) particles hiding in 2D micelles and bilayer structures

Lipids, or fats, are a group organic compounds that help store energy, maintain cell structure and signal important biochemical reactions in the body. Two lipids – cholesterol and triglycerides -- are

The olive tree is a fruit tree that grows in many areas including the Mediterranean basin. According to historians the appearance of the olive tree goes back to 10,000 years before our era. In oriental

The Sugar and Cholesterol and other Lipids in Your Blood" Chemistry, Control and Chaos Lecture by Dr. Tracy Fulton, PhD ▶️ DTube ▶️ IPFS

Fats (a.k.a. Lipids) Lipids contain a broad category of fats and oils and other substances that generally do not easily interact with water. Just like carbohydrates there are some lipids that are better