Hi @mathowl : Sorry for the confusion. Okay so coarse-grained simulations are indeed "dimensionally reduced" versions of original systems. Yes, a real lipid will access more configurations, but our 3 particle coarse-grained models will not have high frequency - low energy motions. Those motions are filtered out effectively. But still you can study many important phenomena. Also speed up certainly!
RE: A toy example of molecule aggregation to familiarize with LAMMPS software